PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2988_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 305aa    MW: 35389.1 Da    PI: 9.7873
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2988_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07115136526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    lCr f+   tCkyGdrC++ H+
  Neem_2988_f_3 115 LCRMFYYQKTCKYGDRCRYLHV 136
                    566555559************6 PP

2zf-CCCH28.42.8e-09194220127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt++Cr++  tG C yG  C FaHg+
  Neem_2988_f_3 194 WKTKPCRNWDMTGSCLYGKICYFAHGQ 220
                    8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.929110138IPR000571Zinc finger, CCCH-type
SMARTSM003560.075111137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6112139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-7114139IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5115136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-14189225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-9192225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887193221IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4193220IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-6194220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSSSWTPTC NFVSPPFQSG DKMLLLHHQY LIEKKERETF PHIEYPSTKR ARTGENFVHN  60
RRMLMNEVMS SNFQTKLGHY TYGDQCLFTH GAKNNHEQST GTWNGEDRLF DEVQLCRMFY  120
YQKTCKYGDR CRYLHVNPER VKEVISQFKD RPMVSSYKTG GSSGSKRSRS GRWEQKGFVK  180
SRSFCDQVNQ KPMWKTKPCR NWDMTGSCLY GKICYFAHGQ AELRHIGSHN ALEPRIVPEN  240
TSNIVSTIND QTRTTTKQQL HGMKSIFKGK ELKKISGIYA DWVDNTGRAP SDLLLLHTYP  300
NKVEN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2990322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-19C3H family protein